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Significant research progress in synthetic biology
Mingzhu DING, Bingzhi LI, Ying WANG, Zexiong XIE, Duo LIU, Yingjin YUAN
Synthetic Biology Journal    2020, 1 (1): 7-28.   DOI: 10.12211/2096-8280.2020-057
Abstract   (7635 HTML1376 PDF(pc) (3953KB)(9153)  

As an emerging, interdisciplinary field, synthetic biology has made great advances in many directions due to wide acceptance of its core principles and rapid progress in DNA synthesis. In this paper, recent development in gene circuits, genome design and synthesis, cell factories, and synthetic microbial consortia is reviewed. The complexity of artificial gene circuits that can be designed and constructed is gradually increasing with more refined control. Synthetic genomes are routinely assembled, expanding from prokaryotes (Mycoplasma to Escherichia coli) to eukaryotes (Saccharomyces cerevisiae), and improved capacity in genome design promotes the research of biological evolution. Metabolic pathways of ever-increasing lengths are constructed based on modularization and orthogonality principles to produce molecules of complex structures, and fundamental rewiring of cellular metabolism is performed for enhanced robustness and compatibility. The design and construction of synthetic microbial consortia have been expanded from two-species systems to multi-species systems, so that more sophisticated functions can be achieved. At the end of this paper, new research directions resulted from the interdisciplinary integration of synthetic biology and other disciplines are discussed.


Fig. 4 Construction and regulation of synthetic microbial consortia
Extracts from the Article
人工多细胞体系的设计构建首要解决的问题是,依据什么样的原理和方法设计、构建特定的多细胞体系;其次是如何使各细胞间的功能协调运行,从而实现底物原料到目标产物的高效转化[图4(a)]。
人工多细胞体系的设计构建已经从两菌体系扩展到多菌体系[图4(b)]。随着菌群中菌株种类的增加,菌株的互作关系愈加复杂,体系的高效性和稳定性会受影响。人工多细胞体系在复杂环境中的鲁棒性研究也是关键问题之一。在构建人工多细胞体系时,更要关注对菌株关系的解析和调控,使多菌分工明确,高效协作。通过控制代谢流分配、减少能量转化过程中的损失、增加功能冗余等策略,使体系内的每一个个体都能够在生产能力、稳定性和鲁棒性方面体现出最优性能。
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