Synthetic Biology Journal ›› 2021, Vol. 2 ›› Issue (5): 778-791.DOI: 10.12211/2096-8280.2021-018
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Ping ZHANG1, Wenping WEI2, Ying ZHOU1, Bangce YE1,2
Received:
2021-02-05
Revised:
2021-08-13
Online:
2021-11-19
Published:
2021-11-19
Contact:
Ying ZHOU, Bangce YE
张萍1, 魏文平2, 周英1, 叶邦策1,2
通讯作者:
周英,叶邦策
作者简介:
基金资助:
CLC Number:
Ping ZHANG, Wenping WEI, Ying ZHOU, Bangce YE. Construction of a light-controlled expression system and its application in Yarrowia lipolytica[J]. Synthetic Biology Journal, 2021, 2(5): 778-791.
张萍, 魏文平, 周英, 叶邦策. 解脂耶氏酵母中光控表达系统的构建及其应用研究[J]. 合成生物学, 2021, 2(5): 778-791.
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URL: https://synbioj.cip.com.cn/EN/10.12211/2096-8280.2021-018
Type | Characteristics | Source |
---|---|---|
Strains | ||
Yarrowia lipolytica Po1f | URA3-, Leu2- | This laboratory |
Yl-CVH | Po1f with plasmid p13-CV-2CarO-Tm | This study |
Yl-CA | Po1f with plasmid p13-CV-2CarO-TAL | This study |
Yl-NA | Yl-CA with plasmid p12-4CC | This study |
Plasmids | ||
pINA1312 | The plasmid contains a strong constitutive promoter hp4d, ura3 gene expression cassette and kanamycin resistance gene | This laboratory |
pINA1269 | The plasmid contains a strong constitutive promoter hp4d, leu2 gene expression cassette and ampicillin resistance gene | This laboratory |
pSET152-Pj23119-2CarO-GFP | The plasmid is a commonly used plasmid pSET152 of Streptomyces which contains CarO site | This laboratory |
pUC57-CarH | The plasmid contains codon optimized CarH gene | This laboratory |
pUC57-VPRH | The plasmid contains codon optimized VPR and HSF1 genes | This laboratory |
p13PxoTAL | The plasmid pINA1312 contains codon optimized tal gene and Ptef promoter | This laboratory |
p13-Tm | The plasmid pINA1312 contains the mcherry expression module controlled by the TEF promoter | This laboratory |
p13-CV | The plasmid pINA1312 contains the CarH-VPRH expression module controlled by the hp4d promoter | This study |
p13-CV-2CarO-Tm | The plasmid is a fluorescent protein expression module 2CarO-TEF-mcherry controlled by an inducible promoter inserted into the plasmid p13-CV | This study |
p13-CV-2CarO-TAL | The plasmid is a TAL expression module controlled by an inducible promoter inserted into the plasmid p13-CV | This study |
p12-4CL | The plasmid pINA1269 contains codon optimized 4cl gene with FBAin promoter | This laboratory |
pCas-AXPCHSCHI | The plasmid contains codon optimized chs gene with Pexp1 promoter and codon optimized chi gene with FBAin promoter, ampicillin resistance gene | This laboratory |
p12-4CC | The plasmid pINA1269 contains the 4cl gene with FBAin promoter, chs gene with Pexp1 promoter and chi gene with FBAin promoter | This study |
Tab. 1 Plasmids and strains used in this study
Type | Characteristics | Source |
---|---|---|
Strains | ||
Yarrowia lipolytica Po1f | URA3-, Leu2- | This laboratory |
Yl-CVH | Po1f with plasmid p13-CV-2CarO-Tm | This study |
Yl-CA | Po1f with plasmid p13-CV-2CarO-TAL | This study |
Yl-NA | Yl-CA with plasmid p12-4CC | This study |
Plasmids | ||
pINA1312 | The plasmid contains a strong constitutive promoter hp4d, ura3 gene expression cassette and kanamycin resistance gene | This laboratory |
pINA1269 | The plasmid contains a strong constitutive promoter hp4d, leu2 gene expression cassette and ampicillin resistance gene | This laboratory |
pSET152-Pj23119-2CarO-GFP | The plasmid is a commonly used plasmid pSET152 of Streptomyces which contains CarO site | This laboratory |
pUC57-CarH | The plasmid contains codon optimized CarH gene | This laboratory |
pUC57-VPRH | The plasmid contains codon optimized VPR and HSF1 genes | This laboratory |
p13PxoTAL | The plasmid pINA1312 contains codon optimized tal gene and Ptef promoter | This laboratory |
p13-Tm | The plasmid pINA1312 contains the mcherry expression module controlled by the TEF promoter | This laboratory |
p13-CV | The plasmid pINA1312 contains the CarH-VPRH expression module controlled by the hp4d promoter | This study |
p13-CV-2CarO-Tm | The plasmid is a fluorescent protein expression module 2CarO-TEF-mcherry controlled by an inducible promoter inserted into the plasmid p13-CV | This study |
p13-CV-2CarO-TAL | The plasmid is a TAL expression module controlled by an inducible promoter inserted into the plasmid p13-CV | This study |
p12-4CL | The plasmid pINA1269 contains codon optimized 4cl gene with FBAin promoter | This laboratory |
pCas-AXPCHSCHI | The plasmid contains codon optimized chs gene with Pexp1 promoter and codon optimized chi gene with FBAin promoter, ampicillin resistance gene | This laboratory |
p12-4CC | The plasmid pINA1269 contains the 4cl gene with FBAin promoter, chs gene with Pexp1 promoter and chi gene with FBAin promoter | This study |
Primers | Sequence (5′- 3′) |
---|---|
1312CarH-F | acacatacaaccacacacatc |
CarH-VPRH-R | tcgtccttgtagtcggatccaga |
CarH-VPRH-F | tgagaaggaggctatc |
KpnIHSF1-R | tggggacaggccatgga |
SalI-Pj23119F | aagcactttgctagataga |
CarO-TEF-R | acggtggtcttttatacccttggctcgtcgtccttgtagtccatcatatgtctagct |
CarO-TEF-F | agctagacatatgatggactacaaggacgacgagccaagggtataaaagaccaccgt |
StuI-XPR2-277R | agctctgtacaccgagaaac |
TEF-TAL-F | agcatttccttctgagtataagaatcattcaaagctcctcgacctacttcgcagtcgc |
1269-SpeI-XPR2-F | aacgcgcgaggcagcagatcc |
FBAin-CYCt-R | gggacgctcgaaggctttaatttgccagtgtacgcagtactatagaggaacaattgcc |
FBAin-CYCt-F | tgttcctctatagtactgcgtacactggcaaattaaagccttcgagcgtcccaaaacc |
1269-SpeI-XPR2-R | agatccgcggccgcataggcc |
Tab. 2 Primers used in this study
Primers | Sequence (5′- 3′) |
---|---|
1312CarH-F | acacatacaaccacacacatc |
CarH-VPRH-R | tcgtccttgtagtcggatccaga |
CarH-VPRH-F | tgagaaggaggctatc |
KpnIHSF1-R | tggggacaggccatgga |
SalI-Pj23119F | aagcactttgctagataga |
CarO-TEF-R | acggtggtcttttatacccttggctcgtcgtccttgtagtccatcatatgtctagct |
CarO-TEF-F | agctagacatatgatggactacaaggacgacgagccaagggtataaaagaccaccgt |
StuI-XPR2-277R | agctctgtacaccgagaaac |
TEF-TAL-F | agcatttccttctgagtataagaatcattcaaagctcctcgacctacttcgcagtcgc |
1269-SpeI-XPR2-F | aacgcgcgaggcagcagatcc |
FBAin-CYCt-R | gggacgctcgaaggctttaatttgccagtgtacgcagtactatagaggaacaattgcc |
FBAin-CYCt-F | tgttcctctatagtactgcgtacactggcaaattaaagccttcgagcgtcccaaaacc |
1269-SpeI-XPR2-R | agatccgcggccgcataggcc |
Fig. 1 Design of the green light response sensor((a)Tool plasmid design of green light response sensor; green light response transcription factor CarH-VPRH is driven by constitutive promoter hp4d, expression of reporter gene mcherry is driven by inducible promoter 2CarO-TEF; (b)"Off" mode under green light; (c) "On" mode of expression in dark condition)
Fig. 2 Performance of the green light response sensor(a)Fluorescence protein detection spectrogram of sensing strain. Black curve is dark group, and green curve is green light irradiation group, excitation light: 570 nm, emission light: 590~700 nm; (b)Green light response signal output difference of strains; Tested strain was Yl-CVH; Culture medium YPD, 72 h; (c)Effect of cobamide vitamin B12 concentration on light-controlled induction system,48 h
Fig. 3 Dynamic response of the green light response sensor to light conditions(Green area in figure represents green light irradiation condition, and gray area represents dark condition. Culture conditions: YPD liquid medium, 30 ℃, 220 r/min, and supplemented with 15 μmol/L cobamide vitamin B12 at 0 h, 24 h, 48 h, 72 h and 96 h; Fluorescence value measurement conditions: excitation light: 580 nm, emission light: 608 nm; Sampling time interval: 12 h)
Fig. 4 Cell imagines regulated by green light irradiation(Imaging strains were suspended and preserved in PBS buffer solution with pH 7.4. Experimental strains were cultured in YPD medium, and added 15 μmol/L cobamide vitamin B12 at 0 h. The strain samples were obtained at 72 h)
Fig. 5 p-Coumaric acid synthesis regulated by green light irradiation(a) p-Coumaric acid synthesis pathway controlled by green light. PPP—pentose phosphate pathway; PEP—phosphoenolpyruvate; E4P— erythrose 4-phosphate; DAHP—3-deoxy-D-arabino-heptulosonic acid-7-phosphate; PPA—prephenate; HPP—4-hydroxy-phenylpyruvate; TAL—tyrosine ammonia lyase(b) HPLC chromatogram of strain Yl-CA. The red curve represents the 50 mg/L p-coumaric acid standard, the black curve represents the strain under dark conditions, and the green curve represents the strain under green light(c) Changes of p-coumaric acid concentration of strain Yl-CA under different light conditions; Medium YPD, and all added 15 μmol/L cobamide vitamin B12 at 0 h
Fig. 6 Naringenin synthesis regulated by green light irradiation(a) Naringenin synthesis pathway controlled by green light. PPP—pentose phosphate pathway; PEP—phosphoenolpyruvate; E4P—erythrose 4-phosphate; DAHP—3-deoxy-D-arabino-heptulosonic acid-7-phosphate; TAL—tyrosine ammonia lyase; 4CL—4-coumaroyl-CoA ligase; CHS—chalcone synthase; CHI—chalcone isomerase(b) HPLC chromatogram of strain Yl-NA. The red curve represents the 50 mg/L p-coumaric acid standard and 50 mg/L naringenin standard, the black curve represents the strain under dark conditions, and the green curve represents the strain under green light(c) Growth curve of strain Yl-NA(d) p-Coumaric acid fermentation curve of strain Yl-NA(e) Naringenin fermentation curve of strain Yl-NA; YPD medium, all added 15 μmol/L cobamide vitamin B12 at 0 h, and the two groups whose light conditions were switched from light to dark at 24 h and 48 h were added 15 μv cobamide vitamin B12 again at 24 h and 48 h, respectively
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