Synthetic Biology Journal ›› 2022, Vol. 3 ›› Issue (5): 847-869.DOI: 10.12211/2096-8280.2022-034
• Invited Review • Previous Articles Next Articles
Jianzhao YANG1,2, Xinguang ZHU1
Received:
2022-06-11
Revised:
2022-08-26
Online:
2022-11-16
Published:
2022-10-31
Contact:
Xinguang ZHU
杨健钊1,2, 朱新广1
通讯作者:
朱新广
作者简介:
基金资助:
CLC Number:
Jianzhao YANG, Xinguang ZHU. Plant synthetic biology for carbon peak and carbon neutrality[J]. Synthetic Biology Journal, 2022, 3(5): 847-869.
杨健钊, 朱新广. 面向碳达峰与碳中和的植物合成生物学[J]. 合成生物学, 2022, 3(5): 847-869.
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URL: https://synbioj.cip.com.cn/EN/10.12211/2096-8280.2022-034
针对疾病 | 应用案例 | 植物底盘 | 参考文献 |
---|---|---|---|
霍乱 | 叶绿体表达霍乱弧菌毒素B亚基(CTB) | 烟草、生菜、玉米、水稻 | [ |
乙肝 | 玉米胚芽表达乙肝抗原HBsAg | 玉米 | [ |
脊髓灰质炎 | 烟草表达人脊髓灰质炎病毒L1蛋白 | 烟草 | [ |
疟疾 | 叶绿体表达疟原虫的AMA1和MSP1蛋白 | 衣藻 | [ |
糖尿病 | 表达人源小胰岛素原 | 番茄、灵芝 | [ |
口腔生物膜(龋齿) | 生菜叶绿体中表达脂肪酶、葡聚糖酶和抗菌肽 | 生菜 | [ |
新冠病毒肺炎 | 组装新冠病毒VLPs | 烟草 | [ |
Tab. 1 Some examples of plant molecular farming
针对疾病 | 应用案例 | 植物底盘 | 参考文献 |
---|---|---|---|
霍乱 | 叶绿体表达霍乱弧菌毒素B亚基(CTB) | 烟草、生菜、玉米、水稻 | [ |
乙肝 | 玉米胚芽表达乙肝抗原HBsAg | 玉米 | [ |
脊髓灰质炎 | 烟草表达人脊髓灰质炎病毒L1蛋白 | 烟草 | [ |
疟疾 | 叶绿体表达疟原虫的AMA1和MSP1蛋白 | 衣藻 | [ |
糖尿病 | 表达人源小胰岛素原 | 番茄、灵芝 | [ |
口腔生物膜(龋齿) | 生菜叶绿体中表达脂肪酶、葡聚糖酶和抗菌肽 | 生菜 | [ |
新冠病毒肺炎 | 组装新冠病毒VLPs | 烟草 | [ |
Fig. 1 The concept of a smart canopy[Leaves in a smart canopy are capable of sensing and intercommunicating the local red/far-red ratio (R/FR), light wavelength and photon flux density (hν), humidity, temperature and [CO2]. Based on these information, a leaf in a smart canopy is capable of adjusting photosynthetic properties and metabolism for optimized photosynthetic energy conversion efficiency. These adjustments may include changing antenna size, switching between C3 photosynthesis (bottom left and bottom right figures) and C4 metabolism (upper right) or algae-type CO2 concentrating mechanism (upper left figure). ] PEP—phosphoenolpyruvate; PYR—pyruvate; MAL—malate; OAA—oxaloacetate; PGA—3-phosphoglycerate; RuBP—ribulose 1,5-bisphosphate; M—mitochondria; Ch—chloroplast; P—peroxisome
类型 | 改造方向 | 改造策略 | 改造效果 | 改造底盘 | 参考文献 |
---|---|---|---|---|---|
光反应 | 改良NPQ | 过表达拟南芥的NPQ相关元件VDE、ZEP、PsbS | 生物量积累增加15% | 烟草 | [ |
光合天线优化 | 减小或重分配天线尺寸 | 预测冠层光合可最多提升30% | 水稻 | [ | |
补充易损光合元件 | 核转基因过表达PS Ⅱ的D1转运进叶绿体 | 生物量较野生型显著增加(拟南芥43.7%~80.2%,烟草15.1%~22.3%,水稻20.6%~22.9%) | 拟南芥、烟草、 水稻 | [ | |
碳代谢 | 改造光呼吸支路 | 引入大肠杆菌的乙醛酸代谢途径 | 干重较野生型提高1倍以上 | 拟南芥 | [ |
构建乙醇酸-草酸(GOC)氧化途径 | 光合效率和生物量分别可提高15%~22%和14%~35% | 水稻 | [ | ||
叶绿体内建立GCGT捷径 | 光合效率可提高6%~16% | 水稻 | [ | ||
叶绿体内让乙醇酸转变为苹果酸 | 生物量可比野生型提高约40% | 烟草 | [ | ||
改造RuBisCO | 引入藻类Red-RuBisCO | 加快植物生长,并且可以作为定向进化改造目标蛋白 | 烟草 | [ | |
光合转 录调控 | 增强光合基因表达 | 过表达EmBP1 | 提高光合速率、生物量及产量可达25% | 水稻 | [ |
敲除光合表达 负调控因子 | 敲除NRP1 | 光合速率和生物量都有显著增加 | 水稻 | [ | |
调控光合和 氮素利用效率 | 过表达DREB1C | 可提高产量30%以上 | 水稻 | [ | |
人工光 合作用 | 人工光反应结合生物固碳体系 | 硅纳米线与固碳细菌共培养 | 最高能量转换效率可达3.6% | 卵型孢子菌(Sporomusaovata) | [ |
光伏电池与蓝细菌PS Ⅰ偶联驱动固碳体系 | 总能量转化效率可达到9% | 蓝细菌 | [ | ||
人工模拟叶绿体 | 微流控包裹类囊体 | 在光照下连续固定CO2转化为有机酸 | 菠菜 | [ | |
大肠杆菌内构建固碳通路 | 重组RuBisCO | 可以固定CO2 | 大肠杆菌 | [ | |
构建卡尔文循环 | 以CO2为碳源合成糖和其他有机物 | 大肠杆菌 | [ | ||
无细胞体系构建固碳通路 | CO2为碳源从头合成淀粉 | 较玉米中淀粉合成速率高约8.5倍 | 无细胞体系 | [ |
Tab. 2 Some synthetic biology examples for improving photosynthesis
类型 | 改造方向 | 改造策略 | 改造效果 | 改造底盘 | 参考文献 |
---|---|---|---|---|---|
光反应 | 改良NPQ | 过表达拟南芥的NPQ相关元件VDE、ZEP、PsbS | 生物量积累增加15% | 烟草 | [ |
光合天线优化 | 减小或重分配天线尺寸 | 预测冠层光合可最多提升30% | 水稻 | [ | |
补充易损光合元件 | 核转基因过表达PS Ⅱ的D1转运进叶绿体 | 生物量较野生型显著增加(拟南芥43.7%~80.2%,烟草15.1%~22.3%,水稻20.6%~22.9%) | 拟南芥、烟草、 水稻 | [ | |
碳代谢 | 改造光呼吸支路 | 引入大肠杆菌的乙醛酸代谢途径 | 干重较野生型提高1倍以上 | 拟南芥 | [ |
构建乙醇酸-草酸(GOC)氧化途径 | 光合效率和生物量分别可提高15%~22%和14%~35% | 水稻 | [ | ||
叶绿体内建立GCGT捷径 | 光合效率可提高6%~16% | 水稻 | [ | ||
叶绿体内让乙醇酸转变为苹果酸 | 生物量可比野生型提高约40% | 烟草 | [ | ||
改造RuBisCO | 引入藻类Red-RuBisCO | 加快植物生长,并且可以作为定向进化改造目标蛋白 | 烟草 | [ | |
光合转 录调控 | 增强光合基因表达 | 过表达EmBP1 | 提高光合速率、生物量及产量可达25% | 水稻 | [ |
敲除光合表达 负调控因子 | 敲除NRP1 | 光合速率和生物量都有显著增加 | 水稻 | [ | |
调控光合和 氮素利用效率 | 过表达DREB1C | 可提高产量30%以上 | 水稻 | [ | |
人工光 合作用 | 人工光反应结合生物固碳体系 | 硅纳米线与固碳细菌共培养 | 最高能量转换效率可达3.6% | 卵型孢子菌(Sporomusaovata) | [ |
光伏电池与蓝细菌PS Ⅰ偶联驱动固碳体系 | 总能量转化效率可达到9% | 蓝细菌 | [ | ||
人工模拟叶绿体 | 微流控包裹类囊体 | 在光照下连续固定CO2转化为有机酸 | 菠菜 | [ | |
大肠杆菌内构建固碳通路 | 重组RuBisCO | 可以固定CO2 | 大肠杆菌 | [ | |
构建卡尔文循环 | 以CO2为碳源合成糖和其他有机物 | 大肠杆菌 | [ | ||
无细胞体系构建固碳通路 | CO2为碳源从头合成淀粉 | 较玉米中淀粉合成速率高约8.5倍 | 无细胞体系 | [ |
Fig. 2 ePlant guided creation of plants for carbon farming(ePlant is a mathematical model to simulate the plant growth and development, the interaction between plant and environment etc. ePlant is based on modeling of photosynthesis, respiration, nitrogen assimilation, assimilate partitioning, water transport etc. ePlant can be used to guide design of ideal architectural, physiological and regulatory features for either food or biomass production[170]. Plants for carbon farming has features such as high biomass, high light and nitrogen use efficiencies, perennial and with biomass resistant to degradation. These features differ dramatically from food crops. ePlant can be used to design ideotypes for crops for carbon farming and hence guide breeding such crops)
类型 | 应用领域 | 内容 | 应用对象 | 参考文献 |
---|---|---|---|---|
标准化植物基因元件 | 克隆和元件标准化体系 | 植物标准化克隆体系 (Plant MoClo Syntax) | 蓝藻、衣藻等 | [ |
衣藻元件工具库 (Chlamy MoClo Toolkit) | 衣藻 | [ | ||
创制合成生物学底盘 | 衣藻突变体表型库 | 衣藻 | [ | |
酵母内融合蓝细菌内共生 | 衣藻 | [ | ||
植物基因线路设计 | 改造信号通路 | 人工脱落酸受体 | 拟南芥 | [ |
构建基因线路 | TEV蛋白酶逻辑门 | 烟草 | [ | |
叶绿体内乳糖操纵子 | 衣藻 | [ | ||
叶绿体核糖体开关(Riboswitch) | 衣藻 | [ | ||
植物基因编辑与定向进化技术 | 精准基因编辑 | 基因组先导编辑 | 水稻、番茄、玉米 | [ |
质体基因编辑 | 生菜、油菜 | [ | ||
定向进化 | 饱和靶向内源诱变编辑器(STEME) | 水稻 | [ |
Tab. 3 Recently published plant synthetic biology tools
类型 | 应用领域 | 内容 | 应用对象 | 参考文献 |
---|---|---|---|---|
标准化植物基因元件 | 克隆和元件标准化体系 | 植物标准化克隆体系 (Plant MoClo Syntax) | 蓝藻、衣藻等 | [ |
衣藻元件工具库 (Chlamy MoClo Toolkit) | 衣藻 | [ | ||
创制合成生物学底盘 | 衣藻突变体表型库 | 衣藻 | [ | |
酵母内融合蓝细菌内共生 | 衣藻 | [ | ||
植物基因线路设计 | 改造信号通路 | 人工脱落酸受体 | 拟南芥 | [ |
构建基因线路 | TEV蛋白酶逻辑门 | 烟草 | [ | |
叶绿体内乳糖操纵子 | 衣藻 | [ | ||
叶绿体核糖体开关(Riboswitch) | 衣藻 | [ | ||
植物基因编辑与定向进化技术 | 精准基因编辑 | 基因组先导编辑 | 水稻、番茄、玉米 | [ |
质体基因编辑 | 生菜、油菜 | [ | ||
定向进化 | 饱和靶向内源诱变编辑器(STEME) | 水稻 | [ |
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